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SRX11960249: RNA-Seq of QS9
1 ILLUMINA (Illumina HiSeq 4000) run: 24.4M spots, 7.4G bases, 2.1Gb downloads

Design: cell culture
Submitted by: SUN YAT-SEN UNIVERSITY
Study: Complex bilateral interactions determine the fate of microplastics and soil protists: implications from a soil amoeba
show Abstracthide Abstract
In this study, we investigated how nano- and micro-plastics interacted with a soil amoeba Dictyostelium discoideum. The results showed that environmental concentrations of nano- and micro-plastics could negatively affect the soil amoeba's fitness and development. D. discoideum ingested both nano- and micro-plastics through phagocytosis but packed and excreted them during slug migration, which may accelerate their biodegradation. Also, nano- and micro-plastic exposure disrupted the nutrient and energy metabolisms of D. discoideum and affected the expression of key genes (e.g., cf45-1, dcsA, aprA, dymB, gefB) related to morphogenesis and phagocytosis.
Sample:
SAMN21031875 • SRS9969598 • All experiments • All runs
Library:
Name: Microbe_QS9_NP100_1
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: Oligo-dT
Layout: PAIRED
Runs: 1 run, 24.4M spots, 7.4G bases, 2.1Gb
Run# of Spots# of BasesSizePublished
SRR1566338224,380,8187.4G2.1Gb2023-01-29

ID:
15878411

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